rs27245011 SNP Detail

Summary

• ID
  rs27245011
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145653718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTCAAAGA TCTTCCTGCC TCTGCCTTCA GAGTGCTGGG
  ATTGCAGGAA TGGCTCACTA TGCCTGGTTT ATGAACACTT CGTAAAATAT AAAACAACAA
  W
  GAAAAATACA AAGTCAAGTT TAAAACACAA TTGCTAAAGC AAACCAGTGC TGTAGAAAGA
  GTGAAAACAT ATAGAAGTCC ATTCTTCAAA GTGCTTCTGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37476431	NES08990911	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27245011					SNP	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37476431	NES08990911	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145653718 () rs orientation: forward

Symbol	Name	Function Class
Rin2	Ras and Rab interactor 2	Intron
Rr566581	regulatory region 566581	860 bp distal
Rr566582	regulatory region 566582	935 bp distal