rs27208361 SNP Detail

Summary

• ID
  rs27208361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31053602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAC CTTGTTTGGG TATCTAGGTG
  Y
  GGTGATGTAT TCCAATCTAG CGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37403283	NES08764306	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	T	C	C	C	C		C		C	T	C		C
ss146399973	ENSMUSSNP3802511	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C					C
ss320221341	CHEV_2_31019110	CHEVERUD	SCREENING_POP	f	SNP												C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27208361					SNP	T	T	C	C	T	C	T	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403283	NES08764306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31053602 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr372995	regulatory region 372995			within coordinates
Rr396880	regulatory region 396880			1233 bp upstream
Rr554555	regulatory region 554555			within coordinates
Rr554556	regulatory region 554556			1246 bp proximal
Tssr23435	transcription start site region 23435			48 bp upstream
Tssr23436	transcription start site region 23436			19 bp upstream