rs27208360 SNP Detail

Summary

• ID
  rs27208360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31054134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTCAAA GCAAGATAAA
  AGATGCACTG TTTATTTGCT TATGAAAGGC ATGCAGTGAG TAAGTGCCCA GGTGTAGAGT
  TCCTGCCTGG GTTGGGTCTG CTTCTCTGGT CCAAGCCAGC ACTTACCTGT CTGGGCCTGT
  TTCTTCCACA GTAGCCTGAG CAGAGCAGCA CCCGCCTTGT AGAGTTGTAG GGAGGCAGCT
  Y
  CCTGTTGCAG AGCACTCCTT AGAGCCCTGC TGGGTCCTGT GCAGGAGGTG GCCAGTGCAT
  CCTCTCTGTT GCTGGTGTCT GGCAGGGTCA GCCTTGGGAT GCTCTGGCAG ACCCTCTCTG
  TCCCCACATG AGGATGTACT GTCCCATTGT CAGGGAGCTT GGCTGCCATT TCCAGGAGAG
  TAGCAGGGAG AGGGCAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403282	NES08764267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208360					SNP	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403282	NES08764267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31054134 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr372995	regulatory region 372995			within coordinates
Rr396880	regulatory region 396880			701 bp upstream
Rr554555	regulatory region 554555			within coordinates
Rr554556	regulatory region 554556			714 bp proximal
Tssr23435	transcription start site region 23435			580 bp upstream
Tssr23436	transcription start site region 23436			551 bp upstream