rs27208352 SNP Detail

Summary

• ID
  rs27208352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31055293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGTGGG TTTGCCTCAG
  TCTCCTGTCA CTGGGAAGTG AGAGGCAGCA CACTGCTCCA AATGCCTAGC TGAACTCTGC
  AGTAAAGGAA ATTCCCAGAG GACCAAAAAA GGGAAGAGGG AGTTGAAAAC ACTGGCTGGA
  GCGGGGAGGG GAGGAAGCGA GTGCCATTCT GAGATATTGC AGGAGTCTGG AGAGAGTTTG
  Y
  ATTAGACCGT TGCTGAAGGC CAGTGCTCCA ACCCTCAGAC CTAGCTGGGA TGGGGAGCCA
  GAGTCAGCCA GGGAATAAGA CCCTCCTGGT GGCAGCTTTC CAGGGCATTG TCTCTTGGCC
  TTGTGGGTGG GGCTTATCCT AGTCCCTCAG AAGGTCCCAT TGACAGCCCC TGAGGCCTGG
  AAACTTGTAG CTATAGGCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403274	NES08764172	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208352					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403274	NES08764172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31055293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpr107	G protein-coupled receptor 107			Intron
				Noncoding-Transcript-Variant
Rr372995	regulatory region 372995			488 bp downstream
Rr396880	regulatory region 396880			158 bp downstream
Rr554555	regulatory region 554555			1089 bp distal
Rr554556	regulatory region 554556			within coordinates
Tssr23435	transcription start site region 23435			1739 bp upstream
Tssr23436	transcription start site region 23436			1710 bp upstream