rs27148808 SNP Detail

Summary

• ID
  rs27148808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:14610341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGCGGTT TCTGGAAAAA
  TTCTGTCCTG CTGCTCATTG TGAAATAGGA GATGTCGGTT GTAGGCGTGG AGTGTGATAA
  GGTGGCTTTT ACGTAAAGCC TTGGCAGGTA CAGTTGGGAT TCCAGACACC CCCAGATCTG
  GGCGGAAAGG AGTTCCTCAA CTTTTATTCT TGGGGTAAAG CCTTCAAACC TGACACTTGA
  R
  CTACTTGGAG AGTGCTGGGA AGAGGTTAGG GTGAATCCAG GAAGAATATT TCTCCTCTGC
  TTAATGGCTT TGGCTTGCTC ATGTCAAGTC CATATTTGCC AGATGGTAAA TTGTGATATT
  TGTATGAATA ATAATACATA ACATAAAATA CACTGGGACG AGGTCTTACT GTGCAGTAGA
  GGGGTGGGAG TGAGGCGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37353143	NES08808733	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27148808					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37353143	NES08808733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:14610341 () rs orientation: forward

Symbol	Name	Function Class
Cacnb2	calcium channel, voltage-dependent, beta 2 subunit	Intron
Gm32741	predicted gene, 32741	945 bp upstream
Rr552088	regulatory region 552088	1412 bp distal
Rr552089	regulatory region 552089	1214 bp distal
Rr552090	regulatory region 552090	within coordinates
Rr552091	regulatory region 552091	1009 bp distal
Rr552092	regulatory region 552092	939 bp distal
Tssr16271	transcription start site region 16271	1671 bp downstream
Tssr16272	transcription start site region 16272	1327 bp downstream
Tssr16273	transcription start site region 16273	1289 bp downstream
Tssr16274	transcription start site region 16274	1259 bp downstream