rs26998509 SNP Detail

Summary

• ID
  rs26998509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87295507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGAGGCG CGAAAGCGCT
  GGAAACCCAA ACCCCGCCCT CCCGCGGGGG AGGGTCAGTG GCGTGACGTC ACACGCGCGG
  CGTAAGGGGC GGGGCTCGCG CGGCCTAGAC TCACGAGGCC TTGCTGCTGC TGAGGAAATC
  CCACACACTG GTTTCATGTA AGGTTGTCTT CTAGTTTCAC TCGTCCGAGT CACGTTTCGG
  R
  TATAGCCTGA CAGTGAACAC AAAAACAAAA AAAGAGGCCG GAGACGCGGA GACGGTAGCC
  AGGCCAAGTG AACCCTGTAC AGCATATTTC CTCACCATGC TCTGCCCTCT TTCACGGGTT
  CCTCAAGAAT CCATCCTCCT GGATGGAAGT TGTAGTAGAC GCAGCAACCA GAAACTGACC
  AGTTGGCAGT TTCCTGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37228531	NES08592861	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26998509					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37228531	NES08592861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87295507 () rs orientation: forward

Symbol	Name	Function Class
Rad51c	RAD51 paralog C	Coding-NonSynonymous
Rr402835	regulatory region 402835	within coordinates
Rr453794	regulatory region 453794	within coordinates
Rr453795	regulatory region 453795	395 bp proximal
Tex14	testis expressed gene 14 intercellular bridge forming factor	384 bp upstream
Tssr103922	transcription start site region 103922	355 bp upstream
Tssr103923	transcription start site region 103923	368 bp upstream
Tssr109961	transcription start site region 109961	257 bp upstream
Tssr109962	transcription start site region 109962	172 bp upstream