rs26971707 SNP Detail

Summary

• ID
  rs26971707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58883817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC CTGTTCTGAA GGGTCTTTTC
  R
  GTAGTCAGAA GCTATTTGAT TTTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37196040	NES08429803	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	A	A	A	A	G	A	A	G
ss38692699	mCV23838195	ABI	CRAMUS_MOUSE	f	SNP								G		A
ss132220983	ENSMUSSNP5371074	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26971707					SNP	G	G	A	G	G	G	A	G	G	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37196040	NES08429803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58883817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2948	CpG island 2948	1253 bp proximal
Gm73767	predicted gene, 73767	1192 bp upstream
Gm74293	predicted gene, 74293	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	1265 bp downstream
Trim11	tripartite motif-containing 11	1533 bp downstream
Tssr108185	transcription start site region 108185	1226 bp upstream