rs266228025 SNP Detail

Summary

• ID
  rs266228025
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138518436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGTTGAT TATTTAAGGG
  AGGGGGAGCC TCGAAGGAGA TTTTTATTTA GCTTTAATGG TTTTCTTTAT TTTCCTTTCG
  TTTTGTTTTT GTTTTGTTTT TATGAGAGAT TGTTATTGTT GTGAATTAAG AAAGAAAACT
  GGTGAGATAT TATTCCTGAT CCTCTGGACC AATCTAAGGA AACAAAGGAA TTACTGCCCC
  M
  CCCCCACCCC CTTGTGGTCC TGACTGGCCA GGACAGACCT TAGCATGAGA AAACAAGTAG
  GAGAACTAGA GACCTGGTCC CCAAGGCTCT CACACTGCCC CCACCTGCAT CTGTCGAGGG
  CTCAGGACTG AGGGATTAGT GGTGATAGTG TCTCCTTGGA CGGACTGACA GTGACGAGCT
  GTTTCTTCTC TAAAAATGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss359920450	MGP_WTSI_3_138475639	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs266228025					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359920450	MGP_WTSI_3_138475639	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138518436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586203	regulatory region 586203			653 bp proximal
Rr586204	regulatory region 586204			1740 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32013	transcription start site region 32013			843 bp upstream