rs266054311 SNP Detail

Summary

• ID
  rs266054311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161616507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCCCTTC CCTGAACATC AGCCAGCTGC
  AACCAGGAAT GTGTGCCAGG TGTTCAAGGC TGCCCTAACC CCCCACTGTG CCTGCCCCCT
  ATCCATCCCA CTTCCCCTGG GAAATGTAGC CTTCCTCCTC TGTAATCATT TAACTTTGCA
  R
  TCTCTCTTCT GGTCACCAGA TGAAAACTGA GGTGCCTAAT TCAGAAGAGT TTGAGATAAG
  CAATAAATAG CATTTTTATA GCAAGTGTGC CTTAACCATC ACACAGCACA TACTAAAACA
  TTATTCAACA TTTACAACAA ATTTAAGTAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081629	CHEV_1_163719069	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266054311					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161616507 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	443 bp upstream
Rr421846	regulatory region 421846	267 bp distal
Tssr14586	transcription start site region 14586	563 bp upstream
Tssr14587	transcription start site region 14587	482 bp upstream
Tssr14588	transcription start site region 14588	467 bp upstream
Tssr14589	transcription start site region 14589	455 bp upstream
Tssr14590	transcription start site region 14590	442 bp upstream
Tssr14591	transcription start site region 14591	432 bp upstream