rs265836478 SNP Detail

Summary

• ID
  rs265836478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115896266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCACTC GCGCTCGCTC
  TCTCGCGCTC TCTTTCTCTC TCTGGGAGAT GAGTGAGTGT CAGTAGGTGT TGGCAGGTTG
  GCTGCAGCCG GGCTTATAGT AGAGCCTCAG TTTGGCGGCG CGGGTCGGCG GCGGGAGAAC
  GAAATGACGG AACCCGGAAG TCGTGGTGGC CATAGCCCGT CCTACGGCGG AGACACATCC
  S
  GAGAGTGGGG AGCTGGAGCG AGGAGGAGCG CGCAGCGCGG AGCCTCTGAT ATGCAGCGAG
  TGCGGTCGGA CGGCCCCGGG GGGGGGGGGG GGGGCTGGGG AAGGGGAGGC TGGAGCGGAG
  AGGACCGGAG CAAATCAGCA AGCCTGCTTC TCCAGGGGGA CGACGCGGGA GGGAGAGGAA
  GAGGGGAGGG AGGGGGGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss355357864	MGP_WTSI_2_115891521	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs265836478					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357864	MGP_WTSI_2_115891521	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115896266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			404 bp downstream
Cpgi12067	CpG island 12067			1073 bp distal
Cpgi12068	CpG island 12068			within coordinates
Cpgi12069	CpG island 12069			752 bp proximal
G630016G05Rik	RIKEN cDNA G630016G05 gene			1440 bp upstream
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562985	regulatory region 562985			1157 bp distal
Rr562986	regulatory region 562986			248 bp distal
Rr562987	regulatory region 562987			44 bp proximal
Rr562988	regulatory region 562988			907 bp proximal
Rr562989	regulatory region 562989			1693 bp proximal
Tssr19467	transcription start site region 19467			1428 bp upstream
Tssr25720	transcription start site region 25720			1885 bp upstream
Tssr25721	transcription start site region 25721			1187 bp upstream
Tssr25722	transcription start site region 25722			1036 bp upstream
Tssr25723	transcription start site region 25723			1014 bp upstream
Tssr25724	transcription start site region 25724			652 bp upstream
Tssr25725	transcription start site region 25725			547 bp upstream
Tssr25726	transcription start site region 25726			129 bp upstream
Tssr25727	transcription start site region 25727			96 bp upstream
Tssr25728	transcription start site region 25728			80 bp upstream
Tssr25729	transcription start site region 25729			50 bp upstream
Tssr25730	transcription start site region 25730			within coordinates
Tssr25731	transcription start site region 25731			13 bp downstream
Tssr25732	transcription start site region 25732			159 bp downstream
Tssr25733	transcription start site region 25733			249 bp downstream
Tssr25734	transcription start site region 25734			1340 bp downstream
Tssr25735	transcription start site region 25735			1370 bp downstream
Tssr25736	transcription start site region 25736			1570 bp downstream
Tssr25737	transcription start site region 25737			1606 bp downstream