rs265496542 SNP Detail

Summary

• ID
  rs265496542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154111221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGTGGG AGGGGACATG
  ACCTGGGTGG TTCAGGTGCA GAGAATGAGG TCCTGTAGGT ACCAGAGAGA TGAGACGGTG
  GCCAACTCTA AGGTTTAATT ATCTATCACA GAACTAGCCA CATAGACTGG CTTTGCCAGC
  AGGGTCCTGG TCTCAGCTGG GCATGCTGTA TCACTTGGAT GCCATCTTCT TGATCTTGCT
  R
  GGCAGGGAGA CATCTGACTG CTGTAGTGGG GGCACCTTCA CGCCCTTTTG CTTCAGCTGA
  CTGTAGAAGT CACTCCTCTC CGAGATGATC CTCTGAACAA GAAACATAGT CAGTGGGTGC
  TTTCTCAGCT CTGCAAGGAG GTCTCCCACC CCCACCCCAG GACTTGCTGC AGCAGGCAAG
  AGCAAACCCA TATCAAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363758509	MGP_WTSI_4_153400873	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265496542					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363758509	MGP_WTSI_4_153400873	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154111221 () rs orientation: forward

Symbol	Name	Function Class
Ccdc27	coiled-coil domain containing 27	Coding-Synonymous
Cpgi15428	CpG island 15428	642 bp distal
Gm57064	predicted gene, 57064	within coordinates
Rr606055	regulatory region 606055	1919 bp distal
Rr606056	regulatory region 606056	554 bp distal
Rr606057	regulatory region 606057	599 bp distal
Rr606058	regulatory region 606058	44 bp distal
Smim1	small integral membrane protein 1	671 bp upstream
Tssr40573	transcription start site region 40573	705 bp downstream
Tssr40574	transcription start site region 40574	552 bp downstream
Tssr44854	transcription start site region 44854	1130 bp upstream
Tssr44855	transcription start site region 44855	1078 bp upstream
Tssr44856	transcription start site region 44856	845 bp upstream
Tssr44857	transcription start site region 44857	772 bp upstream
Tssr44858	transcription start site region 44858	672 bp upstream