rs265339313 SNP Detail

Summary

• ID
  rs265339313
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71158987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGTCAC CGTGGGCAAA
  TGTCTATTCC CCCGGGCTAA AGCTCTGAGT TCCGGATTGG ATTGCAAGGC AGTTTCGAAA
  TCTAACACGT TGCGAATAGA CACTTGTCAT GCTCACATGC TCTTTAAACG TCTGGGCTAG
  GGGGACGGCC AGAGCGCGCG TGTGCCCCAC TGCGACTCCC CCACCCCCAC GCGCCTTTTT
  W
  AAAAGATGGG GGACTACGCC GGGACTGCTC ATCTGTTTCA GTAAACAGTG TCTACTTTGT
  GTGCTAATAT CCCACCAGAG GACACCCTTC AGTATTTCAA ACAGAAACTA GCCATTAAAT
  AAACACTCAT TCCTATTGGT TTATTTTGCT TGAGAGGGGA GCTCCAAAGA GTTGAACGAA
  GAATCGAGAA TCGTCCCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923320	MGP_WTSI_17_71201332	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265339313					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923320	MGP_WTSI_17_71201332	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71158987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			1580 bp upstream
Gm56903	predicted gene, 56903			115 bp downstream
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			260 bp upstream
Rr530335	regulatory region 530335			1315 bp distal
Rr530336	regulatory region 530336			934 bp distal
Rr530337	regulatory region 530337			880 bp distal
Rr530338	regulatory region 530338			295 bp distal
Rr530339	regulatory region 530339			within coordinates
Rr530340	regulatory region 530340			275 bp proximal
Rr530341	regulatory region 530341			776 bp proximal
Rr530342	regulatory region 530342			1155 bp proximal
Rr530343	regulatory region 530343			1786 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145685	transcription start site region 145685			1805 bp downstream
Tssr145686	transcription start site region 145686			1272 bp downstream
Tssr145687	transcription start site region 145687			628 bp downstream
Tssr145688	transcription start site region 145688			23 bp upstream
Tssr145689	transcription start site region 145689			413 bp upstream
Tssr145690	transcription start site region 145690			739 bp upstream
Tssr145691	transcription start site region 145691			759 bp upstream
Tssr145692	transcription start site region 145692			803 bp upstream
Tssr145693	transcription start site region 145693			1008 bp upstream
Tssr145694	transcription start site region 145694			1108 bp upstream
Tssr145695	transcription start site region 145695			1751 bp upstream
Tssr149221	transcription start site region 149221			1634 bp upstream
Tssr149222	transcription start site region 149222			924 bp upstream
Tssr149223	transcription start site region 149223			905 bp upstream
Tssr149224	transcription start site region 149224			874 bp upstream
Tssr149225	transcription start site region 149225			776 bp upstream
Tssr149226	transcription start site region 149226			760 bp upstream
Tssr149227	transcription start site region 149227			349 bp upstream
Tssr149228	transcription start site region 149228			254 bp upstream
Tssr149229	transcription start site region 149229			218 bp upstream
Tssr149230	transcription start site region 149230			99 bp upstream
Tssr149231	transcription start site region 149231			240 bp downstream
Tssr149232	transcription start site region 149232			283 bp downstream
Tssr149233	transcription start site region 149233			803 bp downstream
Tssr149234	transcription start site region 149234			1183 bp downstream
Tssr149235	transcription start site region 149235			1480 bp downstream
Tssr149236	transcription start site region 149236			1490 bp downstream
Tssr149237	transcription start site region 149237			1559 bp downstream
Tssr149238	transcription start site region 149238			1650 bp downstream