rs265121149 SNP Detail

Summary

• ID
  rs265121149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108350693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAGTGCT CACCACCTTT
  AAAGCCAGGC GTGGAGGCAG ATCTGGACCC CCAGCTGAGA GGAGAGGACT ACTTGGGCCC
  ACTGAGTTCT ACACTAGCCT GGACAAAATT GCCAGGCCTC ATCTTGAAAA CAAACGCTCA
  CTTTTTAAAG TTGTCCTTTA ATGCCTGTCT ATACTATTGA TCCCTAAAGA ACCTACCAAT
  R
  TCTCTTCAGG TAAGGGTCAA AATTTCCTAT ATGTGCACAT TCTATGCAAG AGACCACTAA
  CATATTTAAA ATCACATTAG TCAGAATAGA TAGGTACAGA AATCTTGCTA TTTCTGATTA
  TGATTCAAGG CAAGGTGCTC GGAACCAAGG TGTTTTGTTT TTGAGGCAGG GTCTGCTGGC
  CTTGAAATGC ATATCCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359164837	MGP_WTSI_3_108246295	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265121149					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359164837	MGP_WTSI_3_108246295	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108350693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13702	CpG island 13702	1327 bp proximal
Gm22942	predicted gene, 22942	1924 bp downstream
Gm56809	predicted gene, 56809	873 bp upstream
Rr397936	regulatory region 397936	1718 bp upstream
Rr583237	regulatory region 583237	475 bp proximal
Rr583238	regulatory region 583238	1782 bp proximal
Rr583239	regulatory region 583239	1857 bp proximal
Rr583240	regulatory region 583240	1996 bp proximal
Sars1	seryl-tRNA synthetase 1	Intron
Tssr31251	transcription start site region 31251	897 bp upstream
Tssr35146	transcription start site region 35146	1770 bp downstream
Tssr35147	transcription start site region 35147	1806 bp downstream