rs265106066 SNP Detail

Summary

• ID
  rs265106066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108803810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGAGAGA GTTTGTGGTA
  AGTATTGTTC ATGTCTTAAA ATGGGGAATA TTTTGCAGCA GGGGAAACAG TGCAGGAACT
  AACTTAACAA GGTTACAGTT ACAAGGCAGG ATTCTGACTA GATTCTCAGC TGTGTCTTTG
  GAGCTGCACG GTAAAGCTGT ACCTAAAACG GAAGTGACTT TTTCATGCTA GTCCTGAGGT
  R
  CTCTTGTGAG AATGTATATG TATTTGGAAA AACCTATCAC AAACCTTCCC ATAATATCTC
  ATTTGGAGCG GAGGCAGGAG GATTACAGGT TGGAGACAAA CTGGGGCTAC ATAGTGAGAT
  CCTGTCTTAG AATTTGTTTT TATATTTAAG GCTGAATATT CTGATTAGAT AGAGTTGTCT
  CAATTTCATC AGCTACATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321894197	CHEV_6_108776843	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265106066					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108803810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	1383 bp proximal
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	within coordinates
Rr399821	regulatory region 399821	1466 bp downstream
Rr399822	regulatory region 399822	634 bp upstream
Rr399823	regulatory region 399823	1487 bp upstream
Rr636211	regulatory region 636211	1282 bp distal
Rr636212	regulatory region 636212	within coordinates
Rr636213	regulatory region 636213	458 bp proximal
Rr636214	regulatory region 636214	1495 bp proximal
Tssr58099	transcription start site region 58099	1659 bp upstream
Tssr58100	transcription start site region 58100	1677 bp upstream
Tssr58101	transcription start site region 58101	1700 bp upstream
Tssr58102	transcription start site region 58102	1713 bp upstream
Tssr58103	transcription start site region 58103	1746 bp upstream
Tssr58104	transcription start site region 58104	1756 bp upstream
Tssr58105	transcription start site region 58105	1784 bp upstream
Tssr58106	transcription start site region 58106	1885 bp upstream
Tssr62395	transcription start site region 62395	1532 bp downstream