rs264750630 SNP Detail

Summary

• ID
  rs264750630
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137849862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCC AGGCGGCTCG GCCTCGTGGT
  G
  AGCTGAGGAT GAGGTTAAGA TGGAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320978587	CHEV_3_137807065	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264750630					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137849862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230076A16Rik	RIKEN cDNA C230076A16 gene			within coordinates
Cpgi13871	CpG island 13871			within coordinates
Mttp	microsomal triglyceride transfer protein			683 bp upstream
Rr375797	regulatory region 375797			within coordinates
Rr398069	regulatory region 398069			828 bp upstream
Rr586084	regulatory region 586084			724 bp distal
Rr586085	regulatory region 586085			574 bp distal
Rr586086	regulatory region 586086			694 bp distal
Rr586087	regulatory region 586087			within coordinates
Rr586088	regulatory region 586088			994 bp proximal
Trmt10a	tRNA methyltransferase 10A			Intron
				mRNA-UTR
				Splice-Site
Tssr31944	transcription start site region 31944			624 bp downstream
Tssr31945	transcription start site region 31945			605 bp downstream
Tssr31946	transcription start site region 31946			258 bp downstream
Tssr31947	transcription start site region 31947			215 bp downstream
Tssr31948	transcription start site region 31948			182 bp downstream
Tssr31949	transcription start site region 31949			164 bp downstream
Tssr35880	transcription start site region 35880			705 bp upstream
Tssr35881	transcription start site region 35881			388 bp upstream
Tssr35882	transcription start site region 35882			369 bp upstream