rs264616584 SNP Detail

Summary

• ID
  rs264616584
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAGCCT GAGAGCTTAG
  GCCTTCGGTC CTAGAAAGGC AGTGTTGGAG AAGTCGCGGG AGGCCCCAGG GGACTGAATA
  AGGTTTAGAT GCAGAGGTCA TCTCGCCCTG ACTCTTGTGG AGGACTAGGG CTTTTCTTTC
  TCCAAATCCT CTTTATTGAC GCTTACAATT TATCAGGATT TCAGGTTACC AATGTGGAAT
  S
  AAAAGATGCT GCTGAGCATA GATAGTAACC CCTTCCCGCG TCCAAACCAT GGCTCTTTGC
  GCAGGTTTTC CTGCTTGTCC GGGTTCGGAG TTCAAATTTG AACTTCCTTG GAACCGGTAC
  AACAACTGTG CAGTGACTTG ACAACTCTAA GCCACCTATT TCCCGAAAGG TACATGTCGT
  TCATGTACAA TGAAATGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331991	CHEV_4_131817823	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264616584					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	66 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	306 bp upstream
Rr600911	regulatory region 600911	1370 bp distal
Rr600912	regulatory region 600912	398 bp distal
Rr600913	regulatory region 600913	within coordinates
Rr600914	regulatory region 600914	960 bp proximal
Rr600915	regulatory region 600915	1155 bp proximal
Tssr39362	transcription start site region 39362	1391 bp downstream
Tssr39363	transcription start site region 39363	1370 bp downstream
Tssr43650	transcription start site region 43650	336 bp upstream
Tssr43651	transcription start site region 43651	286 bp upstream