rs264609820 SNP Detail

Summary

• ID
  rs264609820
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCTACA CAGAATGGAG
  AACTCAAAAT AAATTTCGTT CTATTCCTCT GAGGCTCATA ATCACAGTGC CAACTCTTGT
  GAAACCAACC TTCATTTTTA TCTTTCTTTT GCTGCTATGA CATGATTTGC ATATCTCTGA
  AGATAAATGC CTTTTACAAT GTGGCAGAAG CACTGTTTAA GTGAAAACTG TTAATAAAAA
  T
  GATTAAGCTT ACCATAATTG TTTCAAGTGC ATGCTGTACA TTGTTCATAA TGTAAGAAAC
  GCCGCTCCTA AATTTCTGTA AGAGGGGAGG TCATTAGAAG ACTCTTAGCT GTCACACAGG
  CACCCAATGA TGAGGGGTTC AGCTCTGCAA CTGAACATTC AGAATAACAG TAGTACCACA
  CAGAGGAAAT GTCACAGTCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360024895	MGP_WTSI_3_142282132	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264609820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024895	MGP_WTSI_3_142282132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324929 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1495 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	714 bp upstream
Rr586457	regulatory region 586457	192 bp distal
Rr586458	regulatory region 586458	944 bp proximal
Rr586459	regulatory region 586459	1445 bp proximal
Tssr32216	transcription start site region 32216	983 bp downstream
Tssr32217	transcription start site region 32217	945 bp downstream
Tssr32218	transcription start site region 32218	891 bp downstream
Tssr32219	transcription start site region 32219	854 bp downstream
Tssr32220	transcription start site region 32220	840 bp downstream
Tssr32221	transcription start site region 32221	822 bp downstream
Tssr32222	transcription start site region 32222	766 bp downstream
Tssr32223	transcription start site region 32223	709 bp downstream
Tssr32224	transcription start site region 32224	655 bp downstream
Tssr32225	transcription start site region 32225	317 bp downstream
Tssr32226	transcription start site region 32226	277 bp downstream
Tssr32227	transcription start site region 32227	1428 bp upstream
Tssr32228	transcription start site region 32228	1479 bp upstream
Tssr32229	transcription start site region 32229	1518 bp upstream
Tssr32230	transcription start site region 32230	1554 bp upstream
Tssr32231	transcription start site region 32231	1571 bp upstream
Tssr35947	transcription start site region 35947	7 bp downstream