rs264490863 SNP Detail

Summary

• ID
  rs264490863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC CTAAGGCCTT CCTAGAGCTC
  Y
  GGGGCAAAGC TAGTATTGCC AGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320673710	CHEV_3_17687853	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264490863					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	722 bp distal
Gm10742	predicted gene 10742	955 bp upstream
Gm56811	predicted gene, 56811	715 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Rr573839	regulatory region 573839	1924 bp distal
Rr573840	regulatory region 573840	1805 bp distal
Rr573841	regulatory region 573841	1507 bp distal
Rr573842	regulatory region 573842	726 bp distal
Rr573843	regulatory region 573843	225 bp distal
Rr573844	regulatory region 573844	979 bp proximal
Rr573845	regulatory region 573845	1480 bp proximal
Rr573846	regulatory region 573846	1604 bp proximal
Tssr28480	transcription start site region 28480	1874 bp upstream
Tssr32676	transcription start site region 32676	1535 bp upstream
Tssr32677	transcription start site region 32677	1008 bp upstream
Tssr32678	transcription start site region 32678	1754 bp downstream