rs264223580 SNP Detail

Summary

• ID
  rs264223580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108805907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGAGCGC TTGTCCTGGG
  GCTGGTGCTG CTGCGCCTCG GCCTCCACGC GGTGCTCTGG TTGGTCTTCG GGCTGGGGCC
  CAGCATGGGC TTCTACCAGC GGTTTCCGCT CAGCTTCGGC TTCCAGCGCT TGAGGGACCC
  CGACGGCTCG GGGCCAGTTG GTCCGCCCGG AGGCCCGGCC TGGCTTCATC GGCCAAGGCG
  Y
  GGAACGGAGG GGCGGCTTGA GACCCCGCCA GAGCCGGGAC CGACGCCGGG ACCGGGCGTG
  TGCGGCCCGG CGCACTGGGG CTATGCCCTG GGCGGCGGTG GCTGCGGCCC GGACGAGTAC
  GAGCGGCGCT ACAGCGGCGC CTTCCCGCCG CAGCTGCGTG CCCAGATGCG CGACCTGGCG
  CGGGGCATGT TCGTCTTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369596543	MGP_WTSI_6_108778940	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264223580					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369596543	MGP_WTSI_6_108778940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108805907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17816	CpG island 17816			within coordinates
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417			670 bp upstream
Rr399822	regulatory region 399822			1162 bp downstream
Rr399823	regulatory region 399823			309 bp downstream
Rr636213	regulatory region 636213			603 bp distal
Rr636214	regulatory region 636214			262 bp distal
Rr636215	regulatory region 636215			203 bp proximal
Tssr58099	transcription start site region 58099			429 bp downstream
Tssr58100	transcription start site region 58100			404 bp downstream
Tssr58101	transcription start site region 58101			388 bp downstream
Tssr58102	transcription start site region 58102			381 bp downstream
Tssr58103	transcription start site region 58103			342 bp downstream
Tssr58104	transcription start site region 58104			330 bp downstream
Tssr58105	transcription start site region 58105			225 bp downstream
Tssr58106	transcription start site region 58106			202 bp downstream
Tssr58107	transcription start site region 58107			180 bp upstream
Tssr62395	transcription start site region 62395			562 bp upstream