rs264208906 SNP Detail

Summary

• ID
  rs264208906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148216978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCTTGG AGGCAGTCCC
  AAATGTTGCT CTGCCTGTTA CCCAAGTGTG GGACTCTGTT CCTCCAGGTT CTTCCAAGAG
  TGACTCAGGA GAGGACTAGG CTCCTACCCC ATCCAGATTA TGGTGACGTG GGGCCTCGGT
  TTCCCTATCT GTAAGATGGG TCAGTTGATT GGCCAAAGCA GATCCAAATG TCCATCAGCA
  R
  ATGAGAGTAC AAACACACTG TGGTCCTTCA GGAGAAGGGG ATGTTAACTG GTCCTAAAAA
  GGAATTCAAG AACAGCAGAG AGGCCCAACA TGTAAAAATG CGTGATGCTA AGCCTGACCA
  CCTGCATTCG AATCCCAAGG CCCACATGTA AGGAAAGTAG TGACTCCCCC AAATTGCCCT
  TTGACCTTTA TACACGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417541	CHEV_4_147506630	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs264208906					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148216978 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15291	CpG island 15291			729 bp distal
Draxin	dorsal inhibitory axon guidance protein			1823 bp upstream
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr604596	regulatory region 604596			1834 bp distal
Rr604598	regulatory region 604598			1596 bp distal
Rr604599	regulatory region 604599			21 bp distal
Tssr1378	transcription start site region 1378			1658 bp downstream
Tssr40251	transcription start site region 40251			1749 bp downstream
Tssr40252	transcription start site region 40252			1691 bp downstream
Tssr40253	transcription start site region 40253			1626 bp downstream
Tssr44585	transcription start site region 44585			1872 bp upstream
Tssr44586	transcription start site region 44586			1849 bp upstream
Tssr44587	transcription start site region 44587			1815 bp upstream