rs264112980 SNP Detail

Summary

• ID
  rs264112980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24984963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGACGT AAAAGGACGG
  GGCGGGGGAG ACCTGGACAG CCTGACGGAG GGACAGAGGG GCGGAGGGAG TGGCGGGAGA
  CCCTTGCCAC GCCTTAGGAC TTTCCATATT GATAAATAGG GGAAATGTGT GTTCTCAAAC
  ACCCCTAGGA AAAGAAGTAT CTTACTGAAA GCCTAATTTC AAAGCTACTC ACTATTTATA
  S
  CGACTTTTAT ATGTCACACA TTACTAGCTT TTCGGTTTTT CTGTCTCCAT AACTGTGAAA
  ACCTTCACGC TTCTTTTCCC GCCTCCCCCT TCAGTTTTTG CCACAGATGG TAGCGTCCGG
  GGCGCGCGCA GGCGTAGAGC GCTCGGGGCG GTGCCGCGGA GGGGCGGGTG ACGCAGCAGC
  CGTCGCTGCC ATTTTAAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388016229	MGP_WTSI_13_24892849	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs264112980					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388016229	MGP_WTSI_13_24892849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24984963 () rs orientation: forward

Symbol	Name	Function Class
BC005537	cDNA sequence BC005537	677 bp upstream
Gm59716	predicted gene, 59716	616 bp downstream
Gm59719	predicted gene, 59719	193 bp upstream
Rr476137	regulatory region 476137	235 bp distal
Rr476138	regulatory region 476138	within coordinates
Rr476139	regulatory region 476139	688 bp proximal
Tssr118946	transcription start site region 118946	157 bp upstream
Tssr118947	transcription start site region 118947	191 bp upstream
Tssr118948	transcription start site region 118948	214 bp upstream
Tssr118949	transcription start site region 118949	352 bp upstream
Tssr118950	transcription start site region 118950	1877 bp upstream
Tssr118951	transcription start site region 118951	1889 bp upstream
Tssr118952	transcription start site region 118952	1977 bp upstream
Tssr121810	transcription start site region 121810	208 bp upstream
Tssr121811	transcription start site region 121811	191 bp upstream