rs263577624 SNP Detail

Summary

• ID
  rs263577624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122039730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGCACCCTGC ACCTGCAGAC CGGGAACCTG CTCAACTGGG GCCGCCTGCG
  R
  AAAAAGTGCC CGTCCACGCA CAGCGAGGAG GTGAGCACGG TGGGGGCCGA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909885	CHEV_3_121948999	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263577624					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122039730 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13765	CpG island 13765			within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit			Coding
				Coding-Synonymous
				Noncoding-Transcript-Variant
Gm46822	predicted gene, 46822			575 bp upstream
Rr375675	regulatory region 375675			1604 bp downstream
Rr397979	regulatory region 397979			581 bp downstream
Rr584264	regulatory region 584264			1812 bp distal
Rr584265	regulatory region 584265			742 bp distal
Rr584266	regulatory region 584266			514 bp distal
Rr584267	regulatory region 584267			587 bp distal
Rr584268	regulatory region 584268			141 bp proximal
Rr584269	regulatory region 584269			1642 bp proximal
Tssr1039	transcription start site region 1039			337 bp downstream
Tssr31478	transcription start site region 31478			531 bp downstream
Tssr31479	transcription start site region 31479			503 bp downstream
Tssr31480	transcription start site region 31480			473 bp downstream
Tssr31481	transcription start site region 31481			459 bp downstream
Tssr31482	transcription start site region 31482			359 bp downstream
Tssr31483	transcription start site region 31483			252 bp downstream
Tssr31484	transcription start site region 31484			160 bp downstream
Tssr35443	transcription start site region 35443			852 bp upstream
Tssr35444	transcription start site region 35444			749 bp upstream