rs263332114 SNP Detail

Summary

• ID
  rs263332114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCTGGT AGTGGCATTA
  AACCCAGGGC TTTAAAAAAT ACTTCTAGTG GTACATTAAC TTATAGCATA ACAGTGGATG
  GTATAGTGTT TCTGTAGTAT ACTTTTCAGT GCATGCTTGT ATCATGTGTG CTTGAAGAAG
  AATTCAACAC TTGTATTCAA AGTCTGACCT ATTGTCTGAT TTGTGTTAAG TCCCTGGAAG
  R
  TTTTAAGTAC TAGTCCGTGG GTAAATCAGC ATGAGGATTA ATTAGACATC TTCAGAACTT
  CAAAGCACAG TTTGGGACAC TTCTCACAGC CACAGTGCCA GTGGCTTGTC AACTCCATGG
  TCATTCCCAG CCTTAGCTCA GAGACTCACA GATGTCAGTC TCAGTTTTGA CAGTGGCTTC
  CCTCAGCCTC TGAGAGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LP/J	RIIIS/J	SM/J	SPRET/EiJ
ss360024909	MGP_WTSI_3_142282588	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	I/LnJ	KK/HlJ	LP/J	RIIIS/J	SM/J	SPRET/EiJ
rs263332114					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024909	MGP_WTSI_3_142282588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325385 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1039 bp upstream
Gbp2b	guanylate binding protein 2b	445 bp downstream
Gm54185	predicted gene, 54185	342 bp upstream
Rr398088	regulatory region 398088	258 bp upstream
Rr586457	regulatory region 586457	648 bp distal
Rr586458	regulatory region 586458	488 bp proximal
Rr586459	regulatory region 586459	989 bp proximal
Tssr32216	transcription start site region 32216	1439 bp downstream
Tssr32217	transcription start site region 32217	1401 bp downstream
Tssr32218	transcription start site region 32218	1347 bp downstream
Tssr32219	transcription start site region 32219	1310 bp downstream
Tssr32220	transcription start site region 32220	1296 bp downstream
Tssr32221	transcription start site region 32221	1278 bp downstream
Tssr32222	transcription start site region 32222	1222 bp downstream
Tssr32223	transcription start site region 32223	1165 bp downstream
Tssr32224	transcription start site region 32224	1111 bp downstream
Tssr32225	transcription start site region 32225	773 bp downstream
Tssr32226	transcription start site region 32226	733 bp downstream
Tssr32227	transcription start site region 32227	972 bp upstream
Tssr32228	transcription start site region 32228	1023 bp upstream
Tssr32229	transcription start site region 32229	1062 bp upstream
Tssr32230	transcription start site region 32230	1098 bp upstream
Tssr32231	transcription start site region 32231	1115 bp upstream
Tssr32232	transcription start site region 32232	1649 bp upstream
Tssr35947	transcription start site region 35947	443 bp upstream