rs263256126 SNP Detail

Summary

• ID
  rs263256126
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137849282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGCTTGA CCGGGAAAAA
  CGCCTCGCGG TAGCCACTAA CCATTCCCGC AAAACCCAGG CCCAGACCCC GCCCCCTACA
  GGCTCCTCCT CTTTCTCCGG TTTGGAGTTA GCGCAGTCCG ATGACGTAAG CCGTAAGTGC
  CGTAACCGGG CGCGCAACCA CCGCCTCTGC CTCTGGGAGT TGAAGTTTCT GAAGGAGGAC
  K
  ACCGCGTGGA GCCGAGAACA CTTCAGAAAG GCTTTCTAAC CGCACCCCGG CGTTCCCCAC
  CGGCCCCGCG GCACGGTAAA TATGGCACTG CGGCTGTCGT GCCCCTGCCC GTTGGTATCC
  TTTCGGATGC CAAAGGAGCG TGAGCTACCC TAGCCTCCGC TGCAACCAAG GCTTCCGGAG
  TAGAGGGTGA GGGCCTGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359902668	MGP_WTSI_3_137806485	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs263256126					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359902668	MGP_WTSI_3_137806485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137849282 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	within coordinates
Cpgi13871	CpG island 13871	within coordinates
Mttp	microsomal triglyceride transfer protein	103 bp upstream
Rr375797	regulatory region 375797	within coordinates
Rr398069	regulatory region 398069	1408 bp upstream
Rr586084	regulatory region 586084	144 bp distal
Rr586085	regulatory region 586085	within coordinates
Rr586086	regulatory region 586086	114 bp distal
Rr586087	regulatory region 586087	7 bp proximal
Rr586088	regulatory region 586088	1574 bp proximal
Trmt10a	tRNA methyltransferase 10A	mRNA-UTR
Tssr31944	transcription start site region 31944	44 bp downstream
Tssr31945	transcription start site region 31945	25 bp downstream
Tssr31946	transcription start site region 31946	301 bp upstream
Tssr31947	transcription start site region 31947	325 bp upstream
Tssr31948	transcription start site region 31948	367 bp upstream
Tssr31949	transcription start site region 31949	401 bp upstream
Tssr35880	transcription start site region 35880	125 bp upstream
Tssr35881	transcription start site region 35881	167 bp downstream
Tssr35882	transcription start site region 35882	196 bp downstream