rs263253053 SNP Detail

Summary

• ID
  rs263253053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGGTT GCCCTGGGCG
  CAGCGGTTGT AAAGAGGGCT AAAGGCTGAG TTAATTACAC CGGGAGGATT TCGCTGGATG
  GGGACCATGG GACTGGCTCC TAAAGTTTTC CCAAAAGGAA AAGGAAGCGA GTAGGGTTAA
  AAAGGTAAAT ACCCGACTAG GTTTTGGTAG AAACTAGTTC TGGCCGGGGT CCCGCCCAAT
  Y
  CCTGGCCGGA GTTCCAGCTG GCTTTACCTC TGCTCTGCTG TTTCCCCGCG GCTGCGCGTC
  AATCACCGAG AGACGAGAGC TGGGGGCGGA GCTTTGGTCA CCCGGCGCGC GTAGCCGGGT
  TCACCCTGCC GCCACCAGGC AGCTGGCAGC GCGACCCAGC CACGCACTGG GAGCGCGCCC
  TCTCCCCAAC TTCTCACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355357878	MGP_WTSI_2_115892833	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263253053					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357878	MGP_WTSI_2_115892833	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			within coordinates
Cpgi12068	CpG island 12068			1095 bp distal
Cpgi12069	CpG island 12069			within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene			128 bp upstream
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562986	regulatory region 562986			1560 bp distal
Rr562987	regulatory region 562987			952 bp distal
Rr562988	regulatory region 562988			within coordinates
Rr562989	regulatory region 562989			381 bp proximal
Rr562990	regulatory region 562990			882 bp proximal
Rr562991	regulatory region 562991			1008 bp proximal
Tssr19467	transcription start site region 19467			116 bp upstream
Tssr19468	transcription start site region 19468			836 bp upstream
Tssr25724	transcription start site region 25724			1964 bp upstream
Tssr25725	transcription start site region 25725			1859 bp upstream
Tssr25726	transcription start site region 25726			1441 bp upstream
Tssr25727	transcription start site region 25727			1408 bp upstream
Tssr25728	transcription start site region 25728			1392 bp upstream
Tssr25729	transcription start site region 25729			1362 bp upstream
Tssr25730	transcription start site region 25730			1301 bp upstream
Tssr25731	transcription start site region 25731			1244 bp upstream
Tssr25732	transcription start site region 25732			1132 bp upstream
Tssr25733	transcription start site region 25733			1034 bp upstream
Tssr25734	transcription start site region 25734			28 bp downstream
Tssr25735	transcription start site region 25735			58 bp downstream
Tssr25736	transcription start site region 25736			258 bp downstream
Tssr25737	transcription start site region 25737			294 bp downstream