rs263106211 SNP Detail

Summary

• ID
  rs263106211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116455844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCTGCT CCGGCTCCCG
  GCGACCGCGA TGGGACAACG CACGTACCCT GGCCCAGCGG GCCGCGGCGG CGGCCACCCG
  CCACAGCATA CGGAGCGCAA GGCTGCCCAG CCTCCCCGCG CGCCGCGCTG GGCCTGGCGA
  GGCTGCGGAG GGGCCGCCGC CTCCTCCCCG AGGCCGGGCG CACGTGGGCC GAGGCCGCAG
  R
  CTCCGAGACG CAGTGCCCCG CCGGAGGTAC CAGCAGCGTC CAGGGGAGCC AGGCCGCGGA
  GGCCGCAGGC CGAGACCGCG GCAGCGCCGG CGGCACGGAA GGGCAGGGCG CTCTCGGCCC
  AGCGAAGGCG GAAGCGGGGG GAAGAGCGAG CCGGGCCCGC ACCCGGGCCG TCCTGCGGCG
  CGGAACCAGC AGCACTCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359358719	MGP_WTSI_3_116365113	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs263106211					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359358719	MGP_WTSI_3_116365113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116455844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930512P04Rik	RIKEN cDNA 4930512P04 gene			1537 bp upstream
Cpgi13738	CpG island 13738			within coordinates
Gm43191	predicted gene 43191			Intron
Mfsd14a	major facilitator superfamily domain containing 14A			Intron
				mRNA-UTR
Rr375625	regulatory region 375625			1835 bp upstream
Rr397966	regulatory region 397966			305 bp upstream
Rr583758	regulatory region 583758			within coordinates
Rr583759	regulatory region 583759			472 bp proximal
Tssr31364	transcription start site region 31364			420 bp downstream
Tssr35324	transcription start site region 35324			91 bp upstream
Tssr35325	transcription start site region 35325			75 bp downstream
Tssr35326	transcription start site region 35326			342 bp downstream
Tssr35327	transcription start site region 35327			359 bp downstream
Tssr35328	transcription start site region 35328			376 bp downstream
Tssr35329	transcription start site region 35329			395 bp downstream
Tssr35330	transcription start site region 35330			448 bp downstream