rs262947688 SNP Detail

Summary

• ID
  rs262947688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTAACTG ACAAGCTTTA
  AGGCAATGTG GTCAGGCCTT GGGGTTAGAT GCTTTTGGTT TATAAATTCC TCAGAGCCAC
  CTTACTCTTT CATTCTCATC TTTGAAAGTT AAACAGGAAC GTCGGCACGT GCTGGTGGTA
  CACGCTTTTA ATTCCACAAT TCCTGTCTAG CCTGGTCTAC ATAGTGGGTT CTAGGCCAGC
  Y
  GTGGCTACAT AATGAGACCT TGTCTCAAAA AAAAAAAGCA AGCCAAACGT AGAGATGAGG
  GGTGTGAGGA GGGAAGTAGG TCGGTAGGTA GAACACGTGC AGAAGACCCA CAAGGGTTAT
  TTCCCATCTT TCTTCCTATA GACATTGTGT TGTATCTGTC TTCTTTGCTT CCAAAGGGCA
  GGTTGTGGGC TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331997	CHEV_4_131818261	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262947688					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	504 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	744 bp upstream
Rr600911	regulatory region 600911	1808 bp distal
Rr600912	regulatory region 600912	836 bp distal
Rr600913	regulatory region 600913	254 bp distal
Rr600914	regulatory region 600914	522 bp proximal
Rr600915	regulatory region 600915	717 bp proximal
Tssr39362	transcription start site region 39362	1829 bp downstream
Tssr39363	transcription start site region 39363	1808 bp downstream
Tssr43650	transcription start site region 43650	774 bp upstream
Tssr43651	transcription start site region 43651	724 bp upstream