rs262889319 SNP Detail

Summary

• ID
  rs262889319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138120733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCAGCCC CGACTTTCTC
  TAGCTGACTT CTGACCCTGT GAGGGTTCAG CCTTGGTGTA GTGGCTGCTG TCTCCTGTTC
  AGAGAAAGCG TGTCACTTTG ATCACTAGCG TTGATTAGCT CTGAGACCAG CTCCCAGCTC
  AACCCAGGGC TGAAAATGTA AGAGCACAAA ACTCACTGTC CCAGGGTCTG GACTTCTCTC
  Y
  CAAGTCTTTC AAAAGAAATC TGGGCTGCTT CCTCTCCTCC CTGAACCAGG TGGGACCATG
  GTCTGTATCG CAGGCTATGA CACACACTTG GCTAAAGAGA AGCCCCTAAG CCGGGCAGTG
  GTGGCACACG CCTTTAAACC CAGCACTTGG GAGGCAGAGG CAAGCAGATT TCTGAGTTCA
  AGGCCAGCCT GGTTTACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373113	CHEV_4_137949337	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262889319					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138120733 () rs orientation: forward

Symbol	Name	Function Class
AB041806	hypothetical protein, MNCb-2457	1776 bp upstream
Cpgi15151	CpG island 15151	1117 bp proximal
Fam43b	family with sequence similarity 43, member B	670 bp downstream
Rr602906	regulatory region 602906	1391 bp proximal
Rr602907	regulatory region 602907	1964 bp proximal
Rr602908	regulatory region 602908	1991 bp proximal