rs262802890 SNP Detail

Summary

• ID
  rs262802890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155500907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCCTCC CTGACCCTGA
  CCCTCCCTGA CCCTGACCCT CTCTGACCCT CCCTGACCCT GACCCTCCCT GACCCTCCCT
  GACCCTGACC CTCCCTGACC CTGACCCTCT CTGACCCTCC CTGACCCTGA CCCTCCCTGA
  CCCTGACCCT CTCTGACCCT CCCTGATCCT GACCCTCCCT GACCCTGACC CTCTCTGACC
  Y
  TCCCTGACCC TGACCCTCTC TGACCCTCCC TGACCCTGAC CCTCTCTGAC CCTCCCTGAC
  CCTGACCCTC TCTGACCCTC CCTGACCCTG ACCCTCCCTG ACCCTGACCC TCTCTGACCC
  TCCCTGATCC TGACCCTCCC TGACCCTGAC CCTCCCTGAC CCTGACCCTC CCTGACCCTG
  ACCCTCTCTG ACCCTCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ
ss363793322	MGP_WTSI_4_154790559	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ
rs262802890					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363793322	MGP_WTSI_4_154790559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155500907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			within coordinates
Rr606476	regulatory region 606476			656 bp proximal
Tssr40639	transcription start site region 40639			1499 bp downstream
Tssr40640	transcription start site region 40640			1464 bp downstream
Tssr40641	transcription start site region 40641			1432 bp downstream
Tssr44947	transcription start site region 44947			1672 bp upstream
Tssr44948	transcription start site region 44948			1646 bp upstream
Tssr44949	transcription start site region 44949			1566 bp upstream