rs262539459 SNP Detail

Summary

• ID
  rs262539459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132441960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACTGTA ACTCTAGTTC
  TAGGGGATCT GACCCCCTCT TCTGGTCTCC AGGGGACCAG GCACATATGT GGTTCACAGA
  TATACATACA GGTAAAACAC TCATACACAT AAAATGAGAT AATTTTTTAA AAAGTAGTTT
  TACCTTAAAA GAGTTTTCCT ACATTTTAAA ATGACCTAAA TAGAAAACAA TTACCACACA
  Y
  ACATATATAT GTGTGTGTGT ATATATATAT ATATATTTTT TTTTTTTCTA GGCAAGCAGC
  CTACCGATTG AGCCACATCC CTAAACTTCT ATGTGTTTTT AGGCAGGAAG ACTGAAAGAA
  AAGAACTTTC CCTCTTTCTA CCTCTACAGC ATACCTGACA ATTACATCAT CCCAAACCAG
  GAAGAAAACA TGGGGATGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355710395	MGP_WTSI_2_132425776	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262539459					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355710395	MGP_WTSI_2_132425776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132441960 () rs orientation: forward

Symbol	Name	Function Class
AU019990	expressed sequence AU019990	within coordinates
Gm75202	predicted gene, 75202	within coordinates
Rr565498	regulatory region 565498	1835 bp distal
Rr565499	regulatory region 565499	1592 bp distal
Rr565500	regulatory region 565500	497 bp distal
Rr565501	regulatory region 565501	149 bp proximal
Rr565502	regulatory region 565502	1812 bp proximal
Tssr663	transcription start site region 663	515 bp downstream
Tssr20313	transcription start site region 20313	578 bp downstream
Tssr26480	transcription start site region 26480	1128 bp downstream