rs262420163 SNP Detail

Summary

• ID
  rs262420163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85311804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACTGAT AGCTGACCCA
  CATGGAATAG AACTCACAAA TGACCCAAAG AACAGTTCTT ATTTTTGGTT TGTATCCTAC
  CTTTCCTTAC TGAACTCAGT GGCTTCAGGA CAGAAATCAC AAAACTTGCC CTCTTTATCC
  ACTCCCCCCA CCCCGCCAGG CCCAACACTC AGTAAATATG CCTGTGATCA GTGCCCGTGA
  R
  CACAGGCATC CTAGGCACAC GGGCCATGAG GCAGTGTTGC CTGTGATTTC AGAGCGGTAG
  CTCTGTCACC TGAGAACCAC ACTGCCCTCT CCCACAGGCG GTCTCCTTTG TCCGCTCATT
  TCAAAACAAA CACACAAGCT GGCTGCGGTA CGTGATCTTT TTATTCTTCA TAAAGTGCTC
  AAAACATGAA GAACAAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369066672	MGP_WTSI_6_85284816	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262420163					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369066672	MGP_WTSI_6_85284816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85311804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17641	CpG island 17641	803 bp distal
Mir705	microRNA 705	1470 bp downstream
Rab11fip5	RAB11 family interacting protein 5 (class I)	140 bp downstream
Rr399729	regulatory region 399729	1567 bp downstream
Rr399730	regulatory region 399730	1105 bp downstream
Rr633175	regulatory region 633175	1582 bp distal
Rr633176	regulatory region 633176	910 bp distal
Rr633177	regulatory region 633177	within coordinates
Sfxn5	sideroflexin 5	1400 bp upstream
Tssr61744	transcription start site region 61744	1381 bp upstream
Tssr61745	transcription start site region 61745	1333 bp upstream