rs261764777 SNP Detail

Summary

• ID
  rs261764777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGGCCA GATCTCTCTA
  GAACTCTTAC CCTGTCAACT CCCCCCCTAC CTCAACCTTA GCACCTGCTT GGCCACCAAA
  CCGCGCCATG GGCAGCGAAG GGCACTAGAC AGGTGTGATG CCGCTTCCGC CCTACGCGAG
  TGACAGCAGT GTGCCAGCTT TTCGTCCCAA GGGGATCGCC GGTATCTGGA CCGAGGCGCT
  R
  GGCTCGCTGG CTCCCTCTCT CATTTCCAGC CAGCCAGGGC TAGTCTGAGA AGGTACGGAG
  GCGTCCCGGG CCTAAGTTTG GTGCGTCGGG GATCCCGGGA TGCTGTCTAA CAGGTACTCA
  CCTCGTAGAT GGCAGAGAGA TCCATGGTGG CGCGAATGGC CTTGGTGAAG AGACCGACTG
  TCGGTTCGCA GAAGTCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858535	MGP_WTSI_7_29164071	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261764777					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858535	MGP_WTSI_7_29164071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44710	predicted gene 44710			within coordinates
Gm57214	predicted gene, 57214			1360 bp downstream
Rr368284	regulatory region 368284			1482 bp upstream
Rr400210	regulatory region 400210			158 bp upstream
Rr644239	regulatory region 644239			1888 bp distal
Rr644240	regulatory region 644240			1098 bp distal
Rr644241	regulatory region 644241			62 bp distal
Rr644242	regulatory region 644242			within coordinates
Rr644243	regulatory region 644243			193 bp proximal
Rr644244	regulatory region 644244			1078 bp proximal
Rr644245	regulatory region 644245			1191 bp proximal
Rr644246	regulatory region 644246			1707 bp proximal
Tssr2163	transcription start site region 2163			304 bp downstream
Tssr2164	transcription start site region 2164			437 bp downstream
Tssr2165	transcription start site region 2165			480 bp downstream
Tssr65463	transcription start site region 65463			1557 bp downstream
Tssr65464	transcription start site region 65464			999 bp downstream
Tssr65465	transcription start site region 65465			300 bp upstream
Tssr71491	transcription start site region 71491			1961 bp upstream
Tssr71492	transcription start site region 71492			1883 bp upstream
Tssr71493	transcription start site region 71493			1833 bp upstream
Tssr71494	transcription start site region 71494			1798 bp upstream
Tssr71495	transcription start site region 71495			1768 bp upstream
Tssr71496	transcription start site region 71496			1421 bp upstream
Tssr71497	transcription start site region 71497			1173 bp upstream
Tssr71498	transcription start site region 71498			1112 bp upstream
Tssr71499	transcription start site region 71499			1018 bp upstream
Tssr71500	transcription start site region 71500			994 bp upstream
Tssr71501	transcription start site region 71501			967 bp upstream
Tssr71502	transcription start site region 71502			942 bp upstream
Tssr71503	transcription start site region 71503			901 bp upstream
Tssr71504	transcription start site region 71504			870 bp upstream
Tssr71505	transcription start site region 71505			853 bp upstream
Tssr71506	transcription start site region 71506			839 bp upstream
Tssr71507	transcription start site region 71507			792 bp upstream
Tssr71508	transcription start site region 71508			758 bp upstream
Tssr71509	transcription start site region 71509			698 bp upstream
Tssr71510	transcription start site region 71510			654 bp upstream
Tssr71511	transcription start site region 71511			618 bp upstream
Tssr71512	transcription start site region 71512			538 bp upstream
Tssr71513	transcription start site region 71513			44 bp downstream
Tssr71514	transcription start site region 71514			173 bp downstream
Tssr71515	transcription start site region 71515			195 bp downstream
Tssr71516	transcription start site region 71516			1229 bp downstream
Tssr71517	transcription start site region 71517			1875 bp downstream
Tssr71518	transcription start site region 71518			1897 bp downstream
Tssr71519	transcription start site region 71519			1918 bp downstream
Tssr71520	transcription start site region 71520			1962 bp downstream
Tssr71521	transcription start site region 71521			1974 bp downstream
Zfp36	zinc finger protein 36			Intron
				mRNA-UTR