rs261737228 SNP Detail

Summary

• ID
  rs261737228
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119393032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGACTCA AAAGGAACGT
  GTTGCTCAGA TGAGAACGGC CCATTTGGGC GAAGAAACTC AAGGGTCCAG TCATTATTCA
  GAGCTTGTTA GGATTTAGTG GCAGAGGACC TTAGTGGATC GGAGCCAAGG AATGCCACAG
  CAGAGCTCAT CATACCACAC AAGATTTCTC TAAGAGATTT ATTGGGCTGG GGGGGGCTGG
  S
  GGTGCTAAAG ACCTCCTTCA AATGGAGACC TGAGGGAGAG ACAAAGAAAC AGAGCTAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAAAACC
  ATCTGGGTTA GCAGAGGACC TTTTAAAGGA TTGGCAACTA ATGATGGCAT AGCCTCTGGT
  GCTGAGTCTC TGAGGGCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss369846286	MGP_WTSI_6_119366089	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs261737228					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369846286	MGP_WTSI_6_119366089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119393032 () rs orientation: forward

Symbol	Name	Function Class
Adipor2	adiponectin receptor 2	Intron
Rr637669	regulatory region 637669	930 bp distal
Rr637670	regulatory region 637670	1207 bp proximal
Rr637671	regulatory region 637671	1623 bp proximal
Tssr62716	transcription start site region 62716	1408 bp downstream
Tssr62717	transcription start site region 62717	1476 bp downstream
Tssr62718	transcription start site region 62718	1528 bp downstream
Tssr62719	transcription start site region 62719	1607 bp downstream