rs261538767 SNP Detail

Summary

• ID
  rs261538767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107686040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTCCATG CCAGGACCCG CCACAGCCTG
  GGGAGGAGGG GGGGTGTCTC TGGCAGTGGG TGGACAAGCC TGCAGTCCAG GGCCTCCTGG
  AAGGGGGTGC AGGCTGCTTC AGGCCACCGT CTCCTCCCCC CCTCACTCCT GCTGTATTGT
  Y
  GCTGCAGTCG GAGACCACTC TCAGTCTGTC GTCCTGTTGA CTGGGGTGAC AGTTTAATAG
  TAGCTTCCTG GGCTGTCATT TAAATCTGCC TGCCAGGTTA GTAGGCCAGG GGCGGGCTGG
  CACGCCCCCT GCCCCCACCC CGGATCTTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251696	CHEV_4_107501448	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261538767					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107686040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			within coordinates
Rr597082	regulatory region 597082			1997 bp proximal