rs261517258 SNP Detail

Summary

• ID
  rs261517258
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGGTAG AAAAATAGAA
  GCAAATTACC TTAAGTAAAA ATGGTGAGAG GGGGGTGGAG GCAGCATCTA GGTTTAGGTG
  AGAGACATAA TTCTAACTGC ACAAGGCAGA CCAATGTTGA ATTCCGTGAT CACTATTTTA
  TAAGCAAATG GCAATAAAAA GGAGAAAGGG AGGAGGAGGA AGGAGGAGCA CGGTACAGTG
  K
  CATGAGGCAC CATTCTGCAT TGTTAAGGTT CTAAACCCCA AATTTCCAAA AGGAGGAATT
  TCAGTGTCAC TTGCTCCCCA GCCCATGGCG ATAAACCTCC AGAGTGCATG TCACAGCCCC
  AAGTGACCCT GGTTGTGTCA GCAGCTCCAC TGGGTGTATG ACCTTTGGCA CAAATAAAAT
  GTATTTACTC ATGCCTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765068	CHEV_3_52558319	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261517258					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661818 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	51 bp proximal
Tssr33262	transcription start site region 33262	648 bp downstream