rs261353201 SNP Detail

Summary

• ID
  rs261353201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107544599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTTTC TGGTGATGCC
  AGGGTGCAGA GTCGGCCTTG ATTTTCTCCT TTGAGTCTTT GATTGCAACT CTCTGGTGTC
  CGTGTTCCTG TCGTAGTGTT CCCTCCCCCT CTCGGTTCCC CGTGCGCCGC ACCCCCTCCC
  CCCACCTGGG GCTAAGAAGT TGTTACCATT CTGGGCTCAT TAGACTCTTG AAAGTTGCGA
  R
  GGGCGGGGGT GGGGGGGGTG GGGGGGGGTG GGGGTGGGGG AAGGTTCATA AAACTTTGCT
  TGTTTAAAAA AGTTTTCCTC ATTTCTGAAA GTGGGCAAGA GCGTATTCAC TGGGTTGTCA
  TTTCAGGAAT TTTACAGGAA ACTGGCACCA TTCAAAGAGT CTAAGTTTTA GATAGGAAGT
  GACTTTAATC CCAACATACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321250039	CHEV_4_107360007	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261353201					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107544599 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	726 bp upstream
Rr376978	regulatory region 376978	31 bp upstream
Rr597042	regulatory region 597042	599 bp proximal
Tssr38260	transcription start site region 38260	1087 bp upstream