rs261317792 SNP Detail

Summary

• ID
  rs261317792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123273264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAGGAG AACAGACTGC
  AGCCTTTAAG GACAAAGTAC AAATTTGGGT GGGGGAGGCT AAGGCCACCA CTCCCCTATT
  CAGAGGCCCC ATAAATCAAT TATTGAGCTA TCCAAATGCA GATGGAACGG ATAAGAGGGG
  GGAGATAAAG ACTCTAGCAG AGGGGTGAAG CCAGGCTATC TTATCTACCT GGTTAGGCAG
  Y
  CTGACCGCTC CAAGTCTCAG CTACTTAACA GCTCCAGGGA ACAAGCAGAG GATGGGCTTA
  GTGATTTCTG GAAGCCAGGC GGAAAACCAG CGAACGTTGG TACAAAGGGA TATACCTAGG
  GTCCTAACCT GTCACTAGGA CTAGCCCGGA CACAGCAAGA CCCTCCTCCA TCACGCGACA
  ATTTAATAGC TCTGAAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533287	MGP_WTSI_5_123585210	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261317792					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533287	MGP_WTSI_5_123585210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123273264 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16574	CpG island 16574	264 bp proximal
Gm38102	predicted gene, 38102	within coordinates
Rr378574	regulatory region 378574	within coordinates
Rr399341	regulatory region 399341	1421 bp downstream
Rr620106	regulatory region 620106	1252 bp distal
Rr620107	regulatory region 620107	1605 bp distal
Rr620108	regulatory region 620108	366 bp distal
Rr620109	regulatory region 620109	within coordinates
Rr620110	regulatory region 620110	969 bp proximal
Rr620111	regulatory region 620111	1521 bp proximal
Rr620112	regulatory region 620112	1963 bp proximal
Tssr48758	transcription start site region 48758	416 bp upstream
Tssr48759	transcription start site region 48759	590 bp upstream
Tssr48760	transcription start site region 48760	632 bp upstream
Tssr48761	transcription start site region 48761	1438 bp upstream
Tssr53204	transcription start site region 53204	1028 bp upstream
Tssr53205	transcription start site region 53205	306 bp downstream
Tssr53206	transcription start site region 53206	347 bp downstream
Tssr53207	transcription start site region 53207	1337 bp downstream