rs261295862 SNP Detail

Summary

• ID
  rs261295862
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130899014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAAGGGA GGCAGGGGCT
  GAGCCTGTCT TGGACCAGGG ATGTCTGTTT CTGCATCACA CTATTGGACA TTCCTGCATC
  CCTATCTCTG CAGGGAACAT CATTCAAGAA GTGCTTCGGA GAAGACTTAA AGACTTTTCA
  CCACAGACAC AAACATTTCT GTGGAGTCTT GTGAATGAAA CATGGGGGTG GGGGGACGGG
  S
  GACAGACTTA GCAACAAGAT AATTTCAAAT CATCAAGACT AACAGGGAAA GCGTTTAAAA
  ATGGTATTAA CATCAGTTTT CCTGAACCTG ATTTCTGTGA AAGAAATATG CAGTGTACTG
  TAACAGTGTA CAGGGATTAA TAAGAACGTG TGTTAAAAGG CAGGATGCCC AAACAGCATG
  CACGCACACG TGTTGTGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359731233	MGP_WTSI_3_130808283	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	C	G	G	G	C	G	G	C	C	G	G	G	G	G	G	C	G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261295862					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	C	G	G	G	C	G	G	C	C	G	G	G	G	G	G	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359731233	MGP_WTSI_3_130808283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130899014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13831	CpG island 13831	601 bp proximal
Gm36603	predicted gene, 36603	within coordinates
Gm56784	predicted gene, 56784	810 bp upstream
Lef1os1	LEF1 opposite strand RNA 1	within coordinates
Rr585264	regulatory region 585264	320 bp proximal
Rr585265	regulatory region 585265	821 bp proximal
Tssr31682	transcription start site region 31682	815 bp upstream