rs261265838 SNP Detail

Summary

• ID
  rs261265838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101215793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTGAGTT AGGAATCAAA TCATAGGTTC
  TATGTTTTCC TTAGAGGGGA Gtaggaactg aacccagggc ctaatgtatg ctagggaaca
  gtgtccctga tctgcaccct aactcAGAAC CTCTAGGTCT GGGACCCTAT GAATTAGCTC
  Y
  CAGTGCTAGT AGCAGGCCAA AAAGGGCTGT TGAAAAGATG CATGTCCATA TTTATATGTC
  CATGTTATAT ATATATGGAC CTGGGAGATT CTGTTGCATA GCTGCGTATA TCTGTATCTA
  TGAATAGGAC AGATAATAGC TAGAGGCCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229518	CHEV_4_101031201	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261265838					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101215793 () rs orientation: forward

Symbol	Name	Function Class
0610043K17Rik	RIKEN cDNA 0610043K17 gene	within coordinates
Cpgi14499	CpG island 14499	1418 bp distal
Rr596127	regulatory region 596127	1956 bp distal
Rr596129	regulatory region 596129	1371 bp distal
Rr596130	regulatory region 596130	779 bp distal
Rr596131	regulatory region 596131	19 bp proximal
Rr596132	regulatory region 596132	562 bp proximal
Tssr42557	transcription start site region 42557	1867 bp upstream
Tssr42558	transcription start site region 42558	1846 bp upstream
Tssr42559	transcription start site region 42559	1803 bp upstream