rs261117600 SNP Detail

Summary

• ID
  rs261117600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84575424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACTTTTT GTTGTTTGTG
  TGCTTTTTAT TTTGTGTTGT TTTGTTTTGA GACAGGGTGT CACAACCTTG GATTTGCTAT
  AAAACCAAGA CTGGCCCTTT TCATACAATG GCTACTTTGC TGTATATATA TATATGTAAT
  ATGCTGTATA TATATATATG TAATATGTAT ACATATATAT ATATATATAT ATGTAATATG
  Y
  ATACATATTA CATTATTGCA TATATTACCC TGGTGAAAAC AGAATATTTT TGGATGTGTT
  GTTTGGGGGG GGTTCTTGAG ACAAGATCTT GCTAGGTAGT ACAAATCCAC CCCAAATTTA
  CAACAGTCAG GCCTCTTCAC TAAGCCTCCC CCGAATGGTG TGATTACCAC CTAACATGTG
  TCAACACACC TTGTCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	ST/bJ
ss354686785	MGP_WTSI_2_84585237	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	KK/HlJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	ST/bJ
rs261117600					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354686785	MGP_WTSI_2_84585237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84575424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11865	CpG island 11865	1111 bp distal
Gm19426	predicted gene, 19426	479 bp upstream
Gm57423	predicted gene, 57423	492 bp downstream
Rr373462	regulatory region 373462	71 bp downstream
Rr560322	regulatory region 560322	1883 bp distal
Rr560324	regulatory region 560324	1382 bp distal
Rr560325	regulatory region 560325	1181 bp distal
Rr560326	regulatory region 560326	675 bp distal
Rr560327	regulatory region 560327	264 bp distal
Tssr18681	transcription start site region 18681	1171 bp downstream
Tssr25039	transcription start site region 25039	1379 bp upstream
Tssr25040	transcription start site region 25040	1316 bp upstream
Tssr25041	transcription start site region 25041	1297 bp upstream