rs261065707 SNP Detail

Summary

• ID
  rs261065707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105722995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGTAGA GTCATCTCAG
  CAGCCGCAGG CTCCTCCTGC TATACCCACT TCCTCGTTTG CAAACTGCTT CACTTCTGAG
  AGACCAGGGC CCTTTCCAGT AGCTTTAGGG ATGGTAAGTT GTAAGTGATT CTTGCTAAGT
  ATTCCTTTTA TGCTCTTAAG TCTCATCAGA GAGATAAGAA ATCAGGGCCC AGATAAACAG
  R
  TGCCTGTGTT ACATTCACTG TAAGTGAGTC TGCAGTGAAG CTCACGTGAA CATGCTGGAG
  GCAAAGGCAA GTTCCAGGGT TCAAGTTCAG TAGGATTCTA ACAGCAAACA ATCACGCCGC
  TCTGCTTCTT TTGTTTAAAA CAAACAACTA GAAAATGCCT CCTTATTAGG TAGGTACTGT
  ACGCTATGAT TGTTAAATCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863290	CHEV_3_105618597	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261065707					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105722995 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	within coordinates
Rr582787	regulatory region 582787	90 bp distal
Rr582788	regulatory region 582788	within coordinates
Rr582789	regulatory region 582789	454 bp proximal
Tssr31084	transcription start site region 31084	124 bp downstream