rs260965499 SNP Detail

Summary

• ID
  rs260965499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78798520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGAACA CGCTGTTCGT
  GAGCAACAAC AGCCGGCGCG CGCGGCCCGA GCTGGCGCTG CGCTTCGCCC GCCTGGGCTT
  CGCGGGGCTG CGCGCCGAGC AGCTCTTCAG CTCCGCGCTG TGTGCCGCGC GCCTCCTGCG
  CCAGCGGCTG TCCGGGCCGC CCGACGCATC GGGCGCAGTG TTCGTGCTGG GAGGCGAGGG
  R
  CTGCGCGCTG AGCTGCGCGC CGCGGGGCTG CGCCTGGCGG GGGACCCCGG CGAGGACCCG
  CGCGTGCGCG CCGTGCTCGT AGGCTACGAC GAGCAGTTTT CCTTCTCCAG GTTGACCGAG
  GCGTGCGCGC ACCTGCGCGA CCCCGACTGC CTGCTCGTGG CCACCGATCG CGACCCTTGG
  CACCCGCTCA GCGACGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394665382	MGP_WTSI_15_78744750	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260965499					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394665382	MGP_WTSI_15_78744750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78798520 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027A07Rik	RIKEN cDNA 1700027A07 gene			within coordinates
Cpgi7305	CpG island 7305			within coordinates
Gm49510	predicted gene, 49510			Intron
Pdxp	pyridoxal (pyridoxine, vitamin B6) phosphatase			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr404490	regulatory region 404490			378 bp downstream
Rr505452	regulatory region 505452			1821 bp distal
Rr505454	regulatory region 505454			391 bp distal
Rr505455	regulatory region 505455			537 bp distal
Rr505456	regulatory region 505456			1293 bp proximal
Rr505457	regulatory region 505457			1502 bp proximal
Tssr132011	transcription start site region 132011			410 bp downstream
Tssr132012	transcription start site region 132012			393 bp downstream
Tssr132013	transcription start site region 132013			354 bp downstream
Tssr132014	transcription start site region 132014			50 bp upstream
Tssr132015	transcription start site region 132015			88 bp upstream