rs260940370 SNP Detail

Summary

• ID
  rs260940370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108291996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCTTTA CTGCTAACTT
  ATGGGCCTCT AGAACCGTGG TTGGTAATCT AGCAGAGTAT GGTACCCTCT GATGGCAGTA
  GTCTGGTAGA ATTGGGCCTC TAGAACACAT GCTGGTGAGA ACAGAGAAGC TGTAGGGAAA
  TTTAGGGGTA AATGTAAATG AAAGATGAAT GTCCCTGGGC ATGTTGAGGC ATGCCCTGCA
  R
  ACCACCCCCA CACTCCTAGG ATAGACTAGA GTGCAGAGAG GGGGAGGGAG AGAGGGAAAG
  AGAGACAGAG AGAGAGAGAG AGAAGGCAGG AGGGATTTTG AATTTGAGAT CATTCTGTGC
  TATAGAGTTG AGACATTGTC TCAGAAAATG GGAGTAGAAC TAAGTTTTCC TCACCTAAAA
  GCAGTTCTCA TGGCCAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359163803	MGP_WTSI_3_108187598	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	G	G	A	A	A	G	G	A	G	A	A	A	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260940370					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	G	G	A	A	A	G	G	A	G	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359163803	MGP_WTSI_3_108187598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108291996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13699	CpG island 13699			544 bp distal
Gm12522	predicted gene 12522			939 bp upstream
Psrc1	proline/serine-rich coiled-coil 1			Intron
				Noncoding-Transcript-Variant
Rr375556	regulatory region 375556			within coordinates
Rr583222	regulatory region 583222			1621 bp distal
Rr583223	regulatory region 583223			944 bp distal
Rr583224	regulatory region 583224			811 bp distal
Rr583225	regulatory region 583225			121 bp distal
Tssr31246	transcription start site region 31246			794 bp downstream
Tssr31247	transcription start site region 31247			782 bp downstream
Tssr31248	transcription start site region 31248			679 bp downstream
Tssr31249	transcription start site region 31249			663 bp downstream