rs260795373 SNP Detail

Summary

• ID
  rs260795373
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74512221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAATAT GTAAATCAGG
  GCTCCCTGCG CCCTAGAGAG TGTCGCAATT ACGCCCCTTG AACAAGAAGC AACAAGCTCC
  CAGCCGGTGA GCTACGGAGG GTGGCTGTGT CGCGGGGGAG GGAGCGGCTG CAGGAAAGGT
  GGGGGTGGGA ACCTCACACT CTCACACCTA GTCCTCTGTG CCAGGGCCGG GGCTCCCCCC
  A
  CCACCACCAC CACCACCGCT CTCGACTGCT CTCCCTTCCC CCTTCCTCCC CCTCCTCCCT
  CCCTCCTCCT CCCCTCCGGC CTAGGTCCGG GTACTTAAAG CAGCGCGGGC GGGCTAAGGC
  GGGCGGGCGG CCCAGTCCGG TGGCGGCAGA TGCGCCCAGC GGTGGCAGCC GCCGGCGGCG
  CGCAGGTGAC CGGCCTGCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354484816	MGP_WTSI_2_74519934	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260795373					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484816	MGP_WTSI_2_74519934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74512221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11793	CpG island 11793			1130 bp distal
Cpgi11794	CpG island 11794			within coordinates
Gm28309	predicted gene 28309			1569 bp upstream
Hoxd11	homeobox D11			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559343	regulatory region 559343			1045 bp distal
Rr559344	regulatory region 559344			within coordinates
Rr559345	regulatory region 559345			1079 bp proximal
Tssr18398	transcription start site region 18398			1216 bp downstream
Tssr18399	transcription start site region 18399			114 bp upstream
Tssr18400	transcription start site region 18400			141 bp upstream
Tssr18401	transcription start site region 18401			409 bp upstream
Tssr18402	transcription start site region 18402			1582 bp upstream
Tssr18403	transcription start site region 18403			1956 bp upstream