rs260662210 SNP Detail

Summary

• ID
  rs260662210
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138918635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAAAAA ATTCCCCGGT
  GTGTGTGTGT GTACATGTGT TTTATGTCTG TTCCCATGCA GGAAGGCATG TATGTGGGAA
  ACTGAGGGTA ACCTCAGGTA TTGTTTCTCT GACATTAAAA TAAAACTGTC TGGGACACAC
  AAATAGCTTT CTGAGGCCCT CCCTAGTTAC CCTGTAGTCC AGCACACAGT AGGCTCACTG
  A
  AGTTTGCTGC TCACACACAA TTTAGGCTGG CCACAGTGGC CTCTGTGGAT ACCTAGGTGC
  TGACAATGGG CGCATGGTCT GCTCCATCCC CACCTTCAGC TATCTGGTCA AGCGTTAGTT
  TCTGAGTTAA AGCCCCCTTG GACCATCCTC CAAAATACCA CCACAGGGCT CGTCTGTCTA
  CCTGCTCTAT CCACTGTTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321380206	CHEV_4_138747239	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260662210					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138918635 () rs orientation: forward

Symbol	Name	Function Class
9530077C14Rik	RIKEN cDNA 9530077C14 gene	528 bp downstream
Capzb	capping actin protein of muscle Z-line subunit beta	1575 bp upstream
Cpgi15162	CpG island 15162	1021 bp proximal
Rr377279	regulatory region 377279	within coordinates
Rr603133	regulatory region 603133	312 bp proximal
Rr603134	regulatory region 603134	1383 bp proximal
Rr603135	regulatory region 603135	1611 bp proximal
Rr603136	regulatory region 603136	1773 bp proximal
Tssr39900	transcription start site region 39900	1593 bp upstream
Tssr39901	transcription start site region 39901	1618 bp upstream
Tssr39902	transcription start site region 39902	1642 bp upstream
Tssr39903	transcription start site region 39903	1910 bp upstream
Tssr39904	transcription start site region 39904	1955 bp upstream
Tssr39905	transcription start site region 39905	1985 bp upstream
Tssr44214	transcription start site region 44214	1131 bp downstream
Tssr44215	transcription start site region 44215	1290 bp downstream
Tssr44216	transcription start site region 44216	1317 bp downstream
Tssr44217	transcription start site region 44217	1340 bp downstream