rs260260275 SNP Detail

Summary

• ID
  rs260260275
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107690066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCAGGG GAGGGGCCCT
  ACCCTGGATG TGTACGAGCA GAGATGCCAG GCAGGGATTG GTGTCCTCCT GTGGTCTGCC
  CCGCGTTGGG TCCTGTGTGG AATCTGACAT GGTTCCTTGT GGAAAGACGG GAGAAAAGCC
  AGCCACACCA GACCACAGGA TCCACAGTGA TGTAAAGCAG CAGGCATCAG ATTTAAGGGC
  A
  CAGGCCCAAA CTAGCCTATT GCTGGTCTTT GGAAACAGCC TTCTACTGCA ACACAGCCCT
  GTGCACCCAC CTACTATTCT GTCAGGGCTC TGTCCACATG GCAAAACCCG AGGAGCAGGG
  CAGAGCCCAT TGCAGCCGAA AGCCCCAAAT GTCTATCATC TGTGACAAGT TTGCCAAGCT
  GTAGAAGACC GTTGAGAGGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251725	CHEV_4_107505474	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260260275					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107690066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			1965 bp upstream
Rr597082	regulatory region 597082			1513 bp distal
Tssr38270	transcription start site region 38270			1912 bp downstream
Tssr38271	transcription start site region 38271			1902 bp downstream