rs260238190 SNP Detail

Summary

• ID
  rs260238190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162692174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGTCAGA AATGACTGTT TTCCTATGGA
  TTTTGTACTG TCTCCTCCAC ATCAATGACA GAAAACACAA ATAATTAAAC AAGATCAGAT
  TGAGCATGCT CCTCCATTAT TGAGATACTA TGTGGGCATG GGGAATCTCA TTTCCAAAGA
  Y
  AGAGGGGCCT TGAGTTATTT AAGAGTGCCA GAGAGCACAG TGATATTCAG TGTTTTGAAC
  CATAGTTTAT GGTAGCTCAG ATATAAGTAT tttttttagt attttttatt ggttatttta
  tttatttaca ttttaaatgt tatccccctt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320083770	CHEV_1_164794736	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260238190					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162692174 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	50 bp distal
Rr422027	regulatory region 422027	221 bp proximal
Rr422028	regulatory region 422028	1851 bp proximal
Rr422029	regulatory region 422029	1995 bp proximal
Tssr14673	transcription start site region 14673	1754 bp downstream
Tssr14674	transcription start site region 14674	1820 bp downstream
Tssr14675	transcription start site region 14675	1835 bp downstream
Tssr14676	transcription start site region 14676	1858 bp downstream
Tssr14677	transcription start site region 14677	1878 bp downstream
Tssr14678	transcription start site region 14678	1897 bp downstream