rs260204447 SNP Detail

Summary

• ID
  rs260204447
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107687623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTAGCCT CCCACGGGCA
  CACGCTGTGG CCTTGAGCTG TCACTTACCT GGGAAATGTG TCTTGGTGGG ACATTCTCTC
  AGCTCCAAGG AGCAGCTGGC AGCTGGCTTA TTTGAAGCCA CATCTCTGCA CAGGAGTGTG
  GGTGGGATCC TTGGTTTGAG GATGTGTGTT GTTTGGGGAA GGACGCCTCT GGGGGTGGGG
  T
  GTGGGAGTGA TGAGTGAGCA TGGTAATTTG CAGGAGCATA CAGGGGCTGG GAGCTGCTGA
  AGGACCAGTC AGCACCATAC CTCCATCGCC TGAGGAGGAA TACCACCCGG ACGTGCGGGC
  AGACAACCGT GCACACCATA CGCCCTTCAG TTGGGGCCAG GACTGTGACT TTATATTCAG
  TCACGTCCCC TTTTGTTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251708	CHEV_4_107503031	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260204447					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107687623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			within coordinates
Rr597082	regulatory region 597082			414 bp proximal
Tssr38270	transcription start site region 38270			523 bp upstream
Tssr38271	transcription start site region 38271			532 bp upstream