rs260116980 SNP Detail

Summary

• ID
  rs260116980
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180533102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCAAAA AGATCCCTAC
  CGGGCAGACT CAAAGGAACA GGCAGAGGAA TGCTTGGGGT GGGCTCCCCT TCTCTTAGCG
  CACAGGCAGC TCCACCCCCA CACCCAGGAC AACCCTTCCC CCAGCCCTTC AGGGCCGGGC
  GGCAGGACGC AGGGAATTGG AAATAGAGAA ACCGGGTGCT CCGGACTGAG TGCATAGGAG
  W
  ACCAGGAGGA AACGCGCAGG CACGTTTCGG CGGAGATGCA AAAAATTAAA CTTGGTTTGA
  CCCATGGAAG GGGTGCTCTC CCAGACTCCC TATGTACCAT GCTCTGGCTT GCTGTAAATA
  TCTCTCACGA ATAGTAAGGG GAGGCCGAAG GGAGGTCCTT GGCCTGGGAA GGGAACTGGT
  CTTTGAGGAG TCGCTGTACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356769428	MGP_WTSI_2_180626014	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260116980					SNP	T	T	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356769428	MGP_WTSI_2_180626014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180533102 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	within coordinates
Cpgi12908	CpG island 12908	1144 bp proximal
Gm14342	predicted gene 14342	1597 bp upstream
Gm27032	predicted gene, 27032	Intron
Gm57443	predicted gene, 57443	1045 bp downstream
Rr572869	regulatory region 572869	1660 bp distal
Rr572870	regulatory region 572870	1431 bp distal
Rr572871	regulatory region 572871	807 bp distal
Rr572872	regulatory region 572872	913 bp distal
Rr572873	regulatory region 572873	659 bp distal
Rr572874	regulatory region 572874	450 bp distal
Rr572875	regulatory region 572875	within coordinates
Rr572876	regulatory region 572876	21 bp proximal
Rr572877	regulatory region 572877	958 bp proximal
Rr572878	regulatory region 572878	1459 bp proximal
Rr572879	regulatory region 572879	1638 bp proximal
Rr572880	regulatory region 572880	1737 bp proximal
Rr572881	regulatory region 572881	1779 bp proximal
Tssr22274	transcription start site region 22274	623 bp downstream
Tssr22275	transcription start site region 22275	611 bp downstream
Tssr22276	transcription start site region 22276	597 bp downstream
Tssr22277	transcription start site region 22277	456 bp downstream
Tssr22278	transcription start site region 22278	1812 bp upstream
Tssr28136	transcription start site region 28136	1613 bp upstream
Tssr28137	transcription start site region 28137	1594 bp upstream
Tssr28138	transcription start site region 28138	1622 bp downstream