rs260078959 SNP Detail

Summary

• ID
  rs260078959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90417812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGCTGG CCTTGAACTC
  AGAAATCTGC CTGCCTCTGC CTCCCGAGTG CTGGGATTAA AGGCGTGTGT CACCACTGCC
  TCTGGTAGTT TTTTTGAGAC AGAGTCTCTA TAATGTAGTT CTGGCTGTTC TAGAATTCTC
  TATACAGACC AGGCTGGGCT TGGACTCACA GAGATCCTCC TGCCTTTTAC GTCCCAGGTG
  Y
  TGAGCTGGTG TTAACTATGG TACGTGCCAC CATTTCTAGC TTTCTTCAGA TTTTTTAAAA
  AAGATTTATT TATTTATTAT ATGTAAGTAC ACTGTAGATG TCTTCAGACA CACTAGAAGA
  GGGCACCAGA TCTCGTTACG GATGGTTGTG AGCCACCATG TGGTTGCTGG GATTTGAACT
  CCGGACCTTT GGAAGAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358833628	MGP_WTSI_3_90314427	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260078959					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358833628	MGP_WTSI_3_90314427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90417812 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	1007 bp upstream
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	875 bp upstream
Rr397813	regulatory region 397813	828 bp downstream
Rr580381	regulatory region 580381	1399 bp distal
Rr580382	regulatory region 580382	1582 bp distal
Rr580383	regulatory region 580383	517 bp distal
S100a1	S100 calcium binding protein A1	529 bp downstream
Tssr30207	transcription start site region 30207	1400 bp downstream
Tssr30208	transcription start site region 30208	819 bp downstream
Tssr34237	transcription start site region 34237	1774 bp upstream
Tssr34238	transcription start site region 34238	999 bp upstream
Tssr34239	transcription start site region 34239	977 bp upstream
Tssr34240	transcription start site region 34240	628 bp downstream
Tssr34241	transcription start site region 34241	1515 bp downstream